SNP Profiles of EQX /Z [CHA]   View Data

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 Key

 1234567891011121314
_Input profile
CCACGGCCAAGGAAACATGGAGAGGGAC
1._RUQ_109
______AA_______
2._GC-01-055-3-10
CCACGGCCTTCCAAGTATCCAGCTCCGT
3._GC-01-055-3-10
CCACGGCCTTCCAAGTATCCAGCTCCGT
4._GC-01-055-3-10
CCACGGCCTTCCAAGTATCCAGCT_GT
5._GC-01-055-3-10
CCACGGCCTTCCAAGTATCCAGCTCCGT
6._GC-01-055-3-10
CCACGGCCTTCCAAGTATCCAGCTCCGT
7._GC-01-055-3-10
CCACGGCCTTCCAAGTATCCAGCTCCGT
8._GC-01-055-3-10
CCACGGCCTTCCAAGTATCCAGCTCCGT
9._GC-01-055-3-10
CCACGGCCTTCCAAGT_CCAGCTCCGT
10._EQX_/Z_[CHA]
_____CCAA_AT_____
11._EQX_/Z_[CHA]
_____CCAA_AT_____
12._EQX_/Z_[CHA]
_____CCAA_AT_____
13._EQX_/Z_[CHA]
_____CCAA_AT_____
14._EQX_/Z_[CHA]
_____CCAA_AT_____
15._EQX_/Z_[CHA]
_____CCAA_AT_____
16._EQX_/Z_[CHA]
_____CCAA_AT_____
17._EQX_/Z_[CHA]
_____CCAA_AT_____
18._EQX_/Z_[CHA]
_____CCAA_______
19._RUQ_109
_____CC__AT_____
20._RUQ_109
_____CC_GT__AG___
21._GC-01-055-3-10
AAACAGAATTCCGGGGAACCGGTTCCTT
22._GC-01-055-3-10
AAACAGAATTCCGGGGAACCGGTTCCTT
23._EQX_/Z_[CHA]
_____CCGG_AA_____
24._EQX_/Z_[CHA]
_____CCGG_AA_____
 1516171819202122232425262728
_Input profile
AACCGGAAAAAGAGAGACAGGGAGACGG
1._RUQ_109
_GG______AC_CC___
2._GC-01-055-3-10
TTGGCCTTAAAGCT_ACCTCCAGGTCC
3._GC-01-055-3-10
TTGGCCTTAAAGCTCTACCTCCAG_CC
4._GC-01-055-3-10
TTGGCCTTAAAGCTCTACCTCCAGGTCC
5._GC-01-055-3-10
TTGGCCTTAAAGCTCTACCTCCAGGTCC
6._GC-01-055-3-10
TTGGCCTTAAAGCTCTACCTCCAGGTCC
7._GC-01-055-3-10
TTGGCCTTAAAGCTCTACCTCCAGGTCC
8._GC-01-055-3-10
TTGGCCTTAAAGCTCTACCTCCAGGTCC
9._GC-01-055-3-10
TTGGCCTTAAAGCTCTACCTCCAGGTCC
10._EQX_/Z_[CHA]
_GGCC_AA_CT_ACCTCCAG_CC
11._EQX_/Z_[CHA]
_GGCC_AA_CT_ACCTCCAGGTCC
12._EQX_/Z_[CHA]
_GGCC_AA_CT_ACCTCCAGGTCC
13._EQX_/Z_[CHA]
_GGCC_AA_CT_ACCTCCAGGTCC
14._EQX_/Z_[CHA]
_GGCC_AA_CT_ACCTCCAGGTCC
15._EQX_/Z_[CHA]
_GGCC_AA_CT_ACCTCCAGGTCC
16._EQX_/Z_[CHA]
_GGCC_AA_CT_ACCTCCAGGTCC
17._EQX_/Z_[CHA]
_GGCC_AA_CT_ACCTCCAGGTCC
18._EQX_/Z_[CHA]
_GGCC_AA_CT_ACCTCCAGGTCC
19._RUQ_109
_GGCC_AA_CT_ACCTCCAGGTCC
20._RUQ_109
_GG_TT___CTCCCTCCAGGTCC
21._GC-01-055-3-10
TTTTCCTTCCGGTTTTACCTCGGGGGCT
22._GC-01-055-3-10
TTTTCCTTCCGGTTTTACCTCGGGGGCT
23._EQX_/Z_[CHA]
_TTCC_CC_TT_ACCTCGGGGGCT
24._EQX_/Z_[CHA]
_TTCC_CC_TT_ACCTCGGGGGCT
 2930313233343536373839404142
_Input profile
AGAAGGACGGAAGGGGCGACTTATAGGG
1._RUQ_109
_____AA______AG_
2._GC-01-055-3-10
CTTTGGACCCAAGGCCCGGTAAATAGGG
3._GC-01-055-3-10
CTTTGGACCCAAGGCCCGGTAAATAGGG
4._GC-01-055-3-10
CTTTGGACCCAAGGCCCGGTAAATAGGG
5._GC-01-055-3-10
CTTTGGACCCAAGGCCCGGTAAATAGGG
6._GC-01-055-3-10
CTTTGGACCCAAGGCCCGGTAAATAGGG
7._GC-01-055-3-10
CTTTGGACCCAAGGCCCGGTAAATAGGG
8._GC-01-055-3-10
CTTTGGACCCAAGGCCCGGTAAATAGGG
9._GC-01-055-3-10
CTTTGGACCCAAGGCCCGGTAAATAGGG
10._EQX_/Z_[CHA]
CT__ACCCAA_CCCG__AT__
11._EQX_/Z_[CHA]
CT__ACCCAA_CCCG__AT__
12._EQX_/Z_[CHA]
CT__ACCCAA_CCCG__AT__
13._EQX_/Z_[CHA]
CT__ACCCAA_CCCG__AT__
14._EQX_/Z_[CHA]
CT__ACCCAA_CCCG__AT__
15._EQX_/Z_[CHA]
CT__ACCCAA_CCCG__AT__
16._EQX_/Z_[CHA]
CT__ACCCAA_CCCG__AT__
17._EQX_/Z_[CHA]
CT__ACCCAA_CCCG__AT__
18._EQX_/Z_[CHA]
CT__ACCCAA_CCCG__AT__
19._RUQ_109
CT__ACCCAA_CCCG__AT__
20._RUQ_109
__GGACCCAA_CC____AGGG
21._GC-01-055-3-10
CCATGGAACCGGGGCCGGGGAAAAGGGG
22._GC-01-055-3-10
CCATGGAACCGGGGCCGGGGAAAAGGGG
23._EQX_/Z_[CHA]
CC__AACCGG_CCGG__AA__
24._EQX_/Z_[CHA]
CC__AACCGG_CCGG__AA__
 4344454647484950515253545556
_Input profile
AAGGGGAGGGAACGGGCCAAAGCCGGCG
1._RUQ_109
_________AA___CG
2._GC-01-055-3-10
AACCGGAGGGAACG_CCAAAGGGGGCG
3._GC-01-055-3-10
AACCGGAGGGAACG_CCAAAGGGGGCG
4._GC-01-055-3-10
AACCGGAGGGAACG_CCAAAGGGGGCG
5._GC-01-055-3-10
AACCGGAGGGAACG_CCAAAGGGGGCG
6._GC-01-055-3-10
AACCGGAGGGAACG_CCAAAGGGGGCG
7._GC-01-055-3-10
AACCGGAGGGAACG_CCAAAGGGGGCG
8._GC-01-055-3-10
AACCGGAGGGAACG_CCAAAGGGGGCG
9._GC-01-055-3-10
AACCGGAGGGAACG_CCAAAGGGGGCG
10._EQX_/Z_[CHA]
AA___GG____AA_GG_CG
11._EQX_/Z_[CHA]
AA___GG____AA_GG_CG
12._EQX_/Z_[CHA]
AA___GG____AA_GG_CG
13._EQX_/Z_[CHA]
AA___GG____AA_GG_CG
14._EQX_/Z_[CHA]
AA___GG____AA_GG_CG
15._EQX_/Z_[CHA]
AA___GG____AA_GG_CG
16._EQX_/Z_[CHA]
AA___GG____AA_GG_CG
17._EQX_/Z_[CHA]
AA___GG____AA_GG_CG
18._EQX_/Z_[CHA]
AA___GG____AA_GG_CG
19._RUQ_109
AA___AG____AA_GG_CG
20._RUQ_109
-_____CC__AA_GG_CG
21._GC-01-055-3-10
AATTAAGGGGAACC_CCAAAGGTGGCG
22._GC-01-055-3-10
AATTAAGGGGAACC_CCAAAGGTGGCG
23._EQX_/Z_[CHA]
AA___GG____AA_GT_CG
24._EQX_/Z_[CHA]
AA___GG____AA_GT_CG
 5758596061626364656667686970
_Input profile
CCAGGGAGAAGGCCAAAAACCCAACCCG
1._RUQ_109
CC_CC___GGAA____CCCT
2._GC-01-055-3-10
CCCTCCCTGGAGGGAATTGTGGTTCCCG
3._GC-01-055-3-10
CCCTCCCTGGAGGGAATTGTGGTTCCCG
4._GC-01-055-3-10
CCCTCCCTGGAGGGAATTGTGGTTCCCG
5._GC-01-055-3-10
CCCTCCCTGGAGGGAATTGTGGTTCCCG
6._GC-01-055-3-10
CCCTCCCTGGAGGGAATTGTGGTTCCCG
7._GC-01-055-3-10
CCCTCCCTGGAGGGAATTGTGGTTCCCG
8._GC-01-055-3-10
CCCTCCCTGGAGGGAATTGTGGTTCCCG
9._GC-01-055-3-10
CCCTCCCTGGAGGGAATTGTGGTTCCCG
10._EQX_/Z_[CHA]
CC__CT__GG_______
11._EQX_/Z_[CHA]
CC__CT__GG_______
12._EQX_/Z_[CHA]
CC__CT__GG_______
13._EQX_/Z_[CHA]
CC__CT__GG_______
14._EQX_/Z_[CHA]
CC__CT__GG_______
15._EQX_/Z_[CHA]
CC__CT__GG_______
16._EQX_/Z_[CHA]
CC__CT__GG_______
17._EQX_/Z_[CHA]
CC__CT__GG_______
18._EQX_/Z_[CHA]
CC__CT__GG_______
19._RUQ_109
CC__CT__GG_______
20._RUQ_109
CC_CCCT__GGAATT__TTCC_
21._GC-01-055-3-10
ACCCCTCTAAAAGGGGTTGTGGTTAACC
22._GC-01-055-3-10
ACCCCTCTAAAAGGGGTTGTGGTTAACC
23._EQX_/Z_[CHA]
AC__CT__GG_______
24._EQX_/Z_[CHA]
AC__CT__GG_______
 717273747576777879808182  
_Input profile
AAGGGGCGAGACGGCGAGATGGAAX_XX_X
1._RUQ_109
_CC__AG______AAX_XX_X
2._GC-01-055-3-10
AACCCCCGAGACCCCGCTATCCAAX_XX_X
3._GC-01-055-3-10
AACCCCCGAGACCCCGCTATCCAAX_XX_X
4._GC-01-055-3-10
AACCCCCGAGACCCCGCTATCCAAX_XX_X
5._GC-01-055-3-10
AACCCCCGAGACCCCGCTATCCAAX_XX_X
6._GC-01-055-3-10
AACCCCCGAGACCCCGCTATCCAAX_XX_X
7._GC-01-055-3-10
AACCCCCGAGACCCCGCTATCCAAX_XX_X
8._GC-01-055-3-10
AACCCCCGAGACCCCGCTATCCAAX_XX_X
9._GC-01-055-3-10
AACCCCCGAGACCCCGCTATCCAAX_XX_X
10._EQX_/Z_[CHA]
_CCCC___CCCG_ATCCAAX_XX_X
11._EQX_/Z_[CHA]
_CCCC___CCCG_ATCCAAX_XX_X
12._EQX_/Z_[CHA]
_CCCC___CCCG_ATCCAAX_XX_X
13._EQX_/Z_[CHA]
_CCCC___CCCG_ATCCAAX_XX_X
14._EQX_/Z_[CHA]
_CCCC___CCCG_ATCCAAX_XX_X
15._EQX_/Z_[CHA]
_CCCC___CCCG_ATCCAAX_XX_X
16._EQX_/Z_[CHA]
_CCCC___CCCG_ATCCAAX_XX_X
17._EQX_/Z_[CHA]
_CCCC___CCCG_ATCCAAX_XX_X
18._EQX_/Z_[CHA]
_CCCC___CCCG_ATCCAAX_XX_X
19._RUQ_109
_CCCC___CCCG_ATCCAAX_XX_X
20._RUQ_109
_CCCC_-AC_____AAX_XX_X
21._GC-01-055-3-10
_GGCCCCAGCCTTCGCCAACTAGX_XX_X
22._GC-01-055-3-10
_GGCCCCAGCCTTCGCCAACTAGX_XX_X
23._EQX_/Z_[CHA]
_GGCC___TTCG_AACTAGX_XX_X
24._EQX_/Z_[CHA]
_GGCC___TTCG_AACTAGX_XX_X

Input profile: EQX_/Z_[CHA] RUQ_109

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._EQX_/Z_[CHA] RUQ_109

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._EQX_/Z_[CHA] GC-01-055-3-10

51.9 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._EQX_/Z_[CHA] GC-01-055-3-10

51.9 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

4._EQX_/Z_[CHA] GC-01-055-3-10

51.9 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

5._EQX_/Z_[CHA] GC-01-055-3-10

51.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._EQX_/Z_[CHA] GC-01-055-3-10

51.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

7._EQX_/Z_[CHA] GC-01-055-3-10

51.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP4
 Mars, 2018

8._EQX_/Z_[CHA] GC-01-055-3-10

51.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

9._EQX_/Z_[CHA] GC-01-055-3-10

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

10._EQX_/Z_[CHA]

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 7 > FP
 Dapeng Zhang, 2016

11._EQX_/Z_[CHA]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._EQX_/Z_[CHA]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 10
 Dapeng Zhang, 2016

13._EQX_/Z_[CHA]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 14
 Dapeng Zhang, 2016

14._EQX_/Z_[CHA]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 15
 Dapeng Zhang, 2016

15._EQX_/Z_[CHA]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 13 > F
 Dapeng Zhang, 2016

16._EQX_/Z_[CHA]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 3 > FP
 Dapeng Zhang, 2016

17._EQX_/Z_[CHA]

48.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 Y9
 Dapeng Zhang, 2016

18._EQX_/Z_[CHA]

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 12 > F
 Dapeng Zhang, 2016

19._EQX_/Z_[CHA] RUQ_109

45.6 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._EQX_/Z_[CHA] RUQ_109

42.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EQX_/Z_[CHA] GC-01-055-3-10

33.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._EQX_/Z_[CHA] GC-01-055-3-10

33.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._EQX_/Z_[CHA]

32.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 8
 Dapeng Zhang, 2016

24._EQX_/Z_[CHA]

32.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 9
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998